STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29384.1Putative choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)    
Predicted Functional Partners:
AIA29385.1
Putative bifunctional choline kinase/phosphocholine cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
licD
Cholinephosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.897
AIA29521.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.732
AIA29507.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
   0.559
cbiQ
Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.540
AIA29383.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.504
AIA29652.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.452
lspA
Lipoprotein signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.447
AIA29775.1
5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.443
AIA29484.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.440
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.