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licD protein (Mycoplasma californicum) - STRING interaction network
"licD" - Cholinephosphotransferase in Mycoplasma californicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
licDCholinephosphotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (252 aa)    
Predicted Functional Partners:
MCFN_01185
Putative bifunctional choline kinase/phosphocholine cytidylyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (535 aa)
 
     
  0.989
MCFN_01180
Putative choline transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)
 
     
  0.923
ileS
Isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile); Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily (892 aa)
              0.525
MCFN_01090
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (364 aa)
 
          0.504
MCFN_01830
Lipoprotein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (340 aa)
   
          0.499
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (243 aa)
              0.495
MCFN_01060
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (427 aa)
 
          0.484
MCFN_03265
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (215 aa)
   
          0.429
MCFN_01875
Glycosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (337 aa)
              0.416
valS
Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily (834 aa)
              0.416
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, Mycoplasma californicum, NCTC 10189, strain ST-6
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