STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29399.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (584 aa)    
Predicted Functional Partners:
AIA29400.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.991
AIA29401.1
ABC transporter substrate-binding lipoprotein; Similar to P37 of Mycoplasma hyorhinis; possible phosphate/phosphonate binding protein or thiamine pyrophosphate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.991
lppD-2
LppD family lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.708
lppD-1
LppD family lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.703
AIA29758.1
Major facilitator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
gtsC
Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.610
gtsB
Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.560
AIA29752.1
Hypothetical protein.
 
     0.557
AIA29350.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.528
AIA29351.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.487
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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