rpmE protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpmE

50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)

Predicted Functional Partners:

rpsD

0.999

rpsP

0.998

rplS

0.998

rplU

0.998

rpmA

0.998

rpmB

0.998

rpmF

0.998

rpsO

0.998

rplT

0.998

rplM

0.998

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rplS	MCFN_02890	MCFN_00275	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplM	rplT	MCFN_02890	MCFN_01720	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.998
rplM	rplU	MCFN_02890	MCFN_00835	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplM	rpmA	MCFN_02890	MCFN_00840	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplM	rpmB	MCFN_02890	MCFN_01020	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplM	rpmE	MCFN_02890	MCFN_01285	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplM	rpmF	MCFN_02890	MCFN_01220	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplM	rpsD	MCFN_02890	MCFN_01280	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplM	rpsO	MCFN_02890	MCFN_01345	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplM	rpsP	MCFN_02890	MCFN_00265	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplS	rplM	MCFN_00275	MCFN_02890	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplS	rplT	MCFN_00275	MCFN_01720	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.998
rplS	rplU	MCFN_00275	MCFN_00835	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplS	rpmA	MCFN_00275	MCFN_00840	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplS	rpmB	MCFN_00275	MCFN_01020	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplS	rpmE	MCFN_00275	MCFN_01285	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplS	rpmF	MCFN_00275	MCFN_01220	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplS	rpsD	MCFN_00275	MCFN_01280	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplS	rpsO	MCFN_00275	MCFN_01345	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplS	rpsP	MCFN_00275	MCFN_00265	50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999