STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29419.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)    
Predicted Functional Partners:
pgiB-1
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.830
pgiB-2
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.803
AIA29420.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.512
glyS
glycyl-tRNA synthetase; Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.468
dnaG
DNA primase; Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.462
rpoD
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
AIA29424.1
NIF3 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
AIA29425.1
dUTPase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.