Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dnaGDNA primase; Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (623 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.981
dnaB
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.937
engA
GTP-binding protein EngA (Der); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.914
glyS
glycyl-tRNA synthetase; Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.837
AIA29424.1
NIF3 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.812
AIA29425.1
dUTPase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
AIA29775.1
5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.724
AIA29420.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.677
topA
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.603
nusA
Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.579
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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