cbiQ protein (Mycoplasma californicum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

cbiQ

Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)

Predicted Functional Partners:

cbiO1

0.999

cbiO2

0.999

AIA29762.1

0.982

AIA29242.1

0.967

oppF-1

0.894

AIA29484.1

0.894

oppF-2

0.894

oppA

0.751

AIA29214.1

0.732

AIA29399.1

0.725

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29214.1	AIA29399.1	MCFN_00175	MCFN_01255	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
AIA29214.1	cbiO1	MCFN_00175	MCFN_01470	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828
AIA29214.1	cbiQ	MCFN_00175	MCFN_01480	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
AIA29214.1	oppA	MCFN_00175	MCFN_00710	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
AIA29214.1	oppF-1	MCFN_00175	MCFN_00730	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
AIA29242.1	cbiO1	MCFN_00315	MCFN_01470	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
AIA29242.1	cbiO2	MCFN_00315	MCFN_01475	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
AIA29242.1	cbiQ	MCFN_00315	MCFN_01480	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AIA29242.1	oppF-2	MCFN_00315	MCFN_01800	In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
AIA29399.1	AIA29214.1	MCFN_01255	MCFN_00175	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
AIA29399.1	cbiO1	MCFN_01255	MCFN_01470	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AIA29399.1	cbiO2	MCFN_01255	MCFN_01475	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AIA29399.1	cbiQ	MCFN_01255	MCFN_01480	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.725
AIA29484.1	cbiO1	MCFN_01705	MCFN_01470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AIA29484.1	cbiO2	MCFN_01705	MCFN_01475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AIA29484.1	cbiQ	MCFN_01705	MCFN_01480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
AIA29484.1	oppA	MCFN_01705	MCFN_00710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
AIA29484.1	oppF-1	MCFN_01705	MCFN_00730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AIA29484.1	oppF-2	MCFN_01705	MCFN_01800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AIA29762.1	cbiO1	MCFN_03265	MCFN_01470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909