ligA protein (Mycoplasma californicum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

ligA

DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)

Predicted Functional Partners:

AIA29775.1

0.856

topA

0.847

leuS

0.799

tpiA

0.791

pcrA

0.639

cbiO1

0.634

cbiO2

0.634

cbiQ

0.634

pgk

0.573

polC

0.530

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29775.1	leuS	MCFN_03340	MCFN_01525	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
AIA29775.1	ligA	MCFN_03340	MCFN_01485	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AIA29775.1	pcrA	MCFN_03340	MCFN_01865	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AIA29775.1	pgk	MCFN_03340	MCFN_01495	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
AIA29775.1	polC	MCFN_03340	MCFN_03010	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
AIA29775.1	topA	MCFN_03340	MCFN_02030	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AIA29775.1	tpiA	MCFN_03340	MCFN_01490	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Triosephosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
cbiO1	cbiO2	MCFN_01470	MCFN_01475	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
cbiO1	cbiQ	MCFN_01470	MCFN_01480	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
cbiO1	ligA	MCFN_01470	MCFN_01485	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
cbiO1	tpiA	MCFN_01470	MCFN_01490	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Triosephosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
cbiO2	cbiO1	MCFN_01475	MCFN_01470	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
cbiO2	cbiQ	MCFN_01475	MCFN_01480	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
cbiO2	ligA	MCFN_01475	MCFN_01485	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
cbiO2	tpiA	MCFN_01475	MCFN_01490	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	Triosephosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
cbiQ	cbiO1	MCFN_01480	MCFN_01470	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
cbiQ	cbiO2	MCFN_01480	MCFN_01475	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	With CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
cbiQ	ligA	MCFN_01480	MCFN_01485	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.634
cbiQ	tpiA	MCFN_01480	MCFN_01490	Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Triosephosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
leuS	AIA29775.1	MCFN_01525	MCFN_03340	leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899