STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepODerived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)    
Predicted Functional Partners:
lon
ATP-dependent protease La; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
AIA29454.1
Putative hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.603
pip
Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.603
AIA29790.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.603
AIA29775.1
5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.568
infB
Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.553
pepP
Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.500
leuS
leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.467
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
 
 0.438
upp
Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.413
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.