holA protein (Mycoplasma californicum) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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[Homology]

Score

holA

DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)

Predicted Functional Partners:

dnaN

0.990

dnaE

0.989

dnaX

0.987

dnaH

0.983

polC

0.926

AIA29775.1

0.668

AIA29711.1

0.657

AIA29460.1

0.608

uvrB

0.582

AIA29568.1

0.557

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29460.1	holA	MCFN_01580	MCFN_01575	Putative transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AIA29460.1	polC	MCFN_01580	MCFN_03010	Putative transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
AIA29568.1	holA	MCFN_02150	MCFN_01575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
AIA29711.1	holA	MCFN_02980	MCFN_01575	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
AIA29775.1	dnaE	MCFN_03340	MCFN_03345	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
AIA29775.1	dnaH	MCFN_03340	MCFN_02965	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
AIA29775.1	dnaN	MCFN_03340	MCFN_00010	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIA29775.1	dnaX	MCFN_03340	MCFN_02945	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
AIA29775.1	holA	MCFN_03340	MCFN_01575	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
AIA29775.1	polC	MCFN_03340	MCFN_03010	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
AIA29775.1	uvrB	MCFN_03340	MCFN_00880	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
dnaE	AIA29775.1	MCFN_03345	MCFN_03340	DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
dnaE	dnaH	MCFN_03345	MCFN_02965	DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
dnaE	dnaN	MCFN_03345	MCFN_00010	DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
dnaE	dnaX	MCFN_03345	MCFN_02945	DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
dnaE	holA	MCFN_03345	MCFN_01575	DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
dnaE	polC	MCFN_03345	MCFN_03010	DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
dnaE	uvrB	MCFN_03345	MCFN_00880	DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
dnaH	AIA29775.1	MCFN_02965	MCFN_03340	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
dnaH	dnaE	MCFN_02965	MCFN_03345	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit alpha; Catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985