Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIA29461.1Nuclease lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (265 aa)    
Predicted Functional Partners:
pyk
Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.827
AIA29460.1
Putative transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
AIA29243.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.732
oppF-2
Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.673
AIA29505.1
Putative oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
   0.669
coaD
Phosphopantetheine adenylyltransferase; Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.491
ackA-2
Acetate kinase; Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
AIA29463.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.484
AIA29733.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
holA
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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