STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29469.1Lipoprotein; It is possible that MCFN_01620 and MCFN_01625 are a single gene with a polyG tract causing a frameshift mutation. The length of the polyG tract in the sequenced isolate has been independently verified by PCR and Sanger sequencing. MCFN_01620 lacks signifcant similarity to known lipoproteins; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (125 aa)    
Predicted Functional Partners:
AIA29468.1
Hypothetical protein; It is possible that MCFN_01620 and MCFN_01625 are a single gene with a polyG tract causing a frameshift mutation. The length of the polyG tract in the sequenced isolate has been independently verified by PCR and Sanger sequencing. MCFN_01620 lacks signifcant similarity to known lipoproteins; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
engB
Ribosome biogenesis GTP-binding protein YsxC (EngB); Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
coaD
Phosphopantetheine adenylyltransferase; Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
ackA-2
Acetate kinase; Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
pta-2
Phosphotransacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
AIA29463.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.458
folD
Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
valS
valyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.