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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29473.1Conjugal transfer protein TraE; Derived by automated computational analysis using gene prediction method: Protein Homology. (934 aa)    
Predicted Functional Partners:
AIA29472.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.830
AIA29474.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.762
AIA29549.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
AIA29222.1
Lipoprotein, acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
AIA29475.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.700
gtsC
Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.656
topA
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.641
gtsB
Glycerol ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
AIA29274.1
Lipoprotein; Potentially subject to phase variation through insertion/deletion mutations in homopolymeric thymidine tract upstream; lipoprotein contains peptide repeats; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.565
AIA29427.1
Putative lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.531
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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