rpoA protein (Mycoplasma californicum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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[Homology]

Score

rpoA

DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)

Predicted Functional Partners:

rpsM

0.998

rpsK

0.998

rpoB

0.998

rpsD

0.997

rpoC

0.997

rplQ

0.990

rpsS

0.987

rpsJ

0.987

rpsG

0.986

rpsE

0.986

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplQ	rpoA	MCFN_01700	MCFN_01695	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
rplQ	rpoB	MCFN_01700	MCFN_02095	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
rplQ	rpoC	MCFN_01700	MCFN_02090	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
rplQ	rpsD	MCFN_01700	MCFN_01280	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
rplQ	rpsE	MCFN_01700	MCFN_02335	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
rplQ	rpsG	MCFN_01700	MCFN_00495	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.989
rplQ	rpsJ	MCFN_01700	MCFN_02425	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
rplQ	rpsK	MCFN_01700	MCFN_01690	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.997
rplQ	rpsM	MCFN_01700	MCFN_01685	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.996
rplQ	rpsS	MCFN_01700	MCFN_02400	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.990
rpoA	rplQ	MCFN_01695	MCFN_01700	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
rpoA	rpoB	MCFN_01695	MCFN_02095	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpoA	rpoC	MCFN_01695	MCFN_02090	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
rpoA	rpsD	MCFN_01695	MCFN_01280	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
rpoA	rpsE	MCFN_01695	MCFN_02335	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
rpoA	rpsG	MCFN_01695	MCFN_00495	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.986
rpoA	rpsJ	MCFN_01695	MCFN_02425	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
rpoA	rpsK	MCFN_01695	MCFN_01690	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.998
rpoA	rpsM	MCFN_01695	MCFN_01685	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.998
rpoA	rpsS	MCFN_01695	MCFN_02400	DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.987