STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIA29484.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (809 aa)    
Predicted Functional Partners:
oppB-2
Oligopeptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.784
oppC-2
Oligopeptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.778
oppB-3
Putative oligopeptide ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   0.675
oppC-3
Putative oligopeptide ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.618
cbiQ
Cobalt ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.612
oppC-1
Oligopeptide ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.561
oppB-1
Oligopeptide ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.549
oppA
Oligopeptide ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.540
rpoA
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.517
oppD-2
Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.513
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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