Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
oppD-2Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)    
Predicted Functional Partners:
oppC-2
Oligopeptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.998
oppB-2
Oligopeptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.997
oppC-1
Oligopeptide ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.996
oppB-1
Oligopeptide ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.955
oppB-3
Putative oligopeptide ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  0.918
oppD-1
Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.913
AIA29550.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
0.913
oppF-2
Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.907
potA
Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
0.906
AIA29400.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.905
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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