STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29507.1Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (340 aa)    
Predicted Functional Partners:
AIA29581.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   0.878
AIA29511.1
Putative ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
AIA29508.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AIA29509.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AIA29510.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AIA29268.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.769
AIA29521.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.670
AIA29360.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.630
AIA29496.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.589
AIA29384.1
Putative choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.559
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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