STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIA29519.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)    
Predicted Functional Partners:
mgtE
Magnesium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.852
manB
Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.831
AIA29759.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.831
AIA29520.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.774
asnS
asparaginyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.492
pcrA
ATP-dependent DNA helicase PcrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.416
AIA29516.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.416
AIA29513.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.411
AIA29515.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.411
AIA29521.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.403
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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