Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ktrBPotassium transporter KtrB; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)    
Predicted Functional Partners:
ktrA
Potassium transporter KtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
AIA29526.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
mscL
Mechanosensitive ion channel protein MscL; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.448
folD
Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.430
atpG
F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.427
atpH
ATP synthase F1 subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.422
fmt
methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.413
mraW
16S rRNA methyltransferase; Catalyzes the methylation of the N4 position of C1402 on the 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.410
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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