STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA29531.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (386 aa)    
Predicted Functional Partners:
ftsZ
Cell division protein FtsZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.751
mraZ
Cell division protein MraZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.738
mraW
16S rRNA methyltransferase; Catalyzes the methylation of the N4 position of C1402 on the 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.738
rsmE
16S ribosomal RNA methyltransferase RsmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
fpg
formamidopyrimidine-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
AIA29535.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
ktrA
Potassium transporter KtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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