STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fpgformamidopyrimidine-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)    
Predicted Functional Partners:
AIA29775.1
5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.980
AIA29535.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
rsmE
16S ribosomal RNA methyltransferase RsmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
fba
Fructose-bisphosphate aldolase; Catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.691
AIA29254.1
dephospho-CoA kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.602
recA
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.572
AIA29536.1
P30 family lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.563
ftsZ
Cell division protein FtsZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.545
uvrB
The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.537
nfo
Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.519
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.