Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIA29549.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)    
Predicted Functional Partners:
AIA29550.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
AIA29551.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.821
AIA29552.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.821
AIA29553.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.821
AIA29473.1
Conjugal transfer protein TraE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
AIA29354.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.743
AIA29356.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.740
lppD-2
LppD family lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.713
lppD-1
LppD family lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.691
AIA29351.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.670
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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