AIA29550.1 protein (Mycoplasma californicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AIA29550.1

ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)

Predicted Functional Partners:

AIA29549.1

0.965

oppD-2

0.913

oppD-1

0.901

AIA29551.1

0.821

AIA29552.1

0.821

AIA29553.1

0.821

oppF-1

0.711

atpC

0.678

AIA29286.1

0.636

AIA29287.1

0.628

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29286.1	AIA29287.1	MCFN_00595	MCFN_00600	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease/ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AIA29286.1	AIA29550.1	MCFN_00595	MCFN_02060	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
AIA29287.1	AIA29286.1	MCFN_00600	MCFN_00595	ABC transporter permease/ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.986
AIA29287.1	AIA29550.1	MCFN_00600	MCFN_02060	ABC transporter permease/ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AIA29549.1	AIA29550.1	MCFN_02055	MCFN_02060	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
AIA29549.1	AIA29551.1	MCFN_02055	MCFN_02065	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.821
AIA29549.1	AIA29552.1	MCFN_02055	MCFN_02070	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.821
AIA29549.1	AIA29553.1	MCFN_02055	MCFN_02075	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AIA29550.1	AIA29286.1	MCFN_02060	MCFN_00595	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
AIA29550.1	AIA29287.1	MCFN_02060	MCFN_00600	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease/ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AIA29550.1	AIA29549.1	MCFN_02060	MCFN_02055	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
AIA29550.1	AIA29551.1	MCFN_02060	MCFN_02065	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.821
AIA29550.1	AIA29552.1	MCFN_02060	MCFN_02070	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.821
AIA29550.1	AIA29553.1	MCFN_02060	MCFN_02075	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AIA29550.1	atpC	MCFN_02060	MCFN_02270	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase F1 subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AIA29550.1	oppD-1	MCFN_02060	MCFN_00725	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
AIA29550.1	oppD-2	MCFN_02060	MCFN_01805	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AIA29550.1	oppF-1	MCFN_02060	MCFN_00730	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
AIA29551.1	AIA29549.1	MCFN_02065	MCFN_02055	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AIA29551.1	AIA29550.1	MCFN_02065	MCFN_02060	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821