AIA29552.1 protein (Mycoplasma californicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AIA29552.1

Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (275 aa)

Predicted Functional Partners:

AIA29549.1

0.830

AIA29550.1

0.830

AIA29551.1

0.830

AIA29553.1

0.830

AIA29554.1

0.470

rpsR

0.464

ssb

0.453

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29549.1	AIA29550.1	MCFN_02055	MCFN_02060	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AIA29549.1	AIA29551.1	MCFN_02055	MCFN_02065	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.830
AIA29549.1	AIA29552.1	MCFN_02055	MCFN_02070	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.830
AIA29549.1	AIA29553.1	MCFN_02055	MCFN_02075	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
AIA29549.1	AIA29554.1	MCFN_02055	MCFN_02080	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.470
AIA29549.1	rpsR	MCFN_02055	MCFN_02050	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AIA29549.1	ssb	MCFN_02055	MCFN_02045	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
AIA29550.1	AIA29549.1	MCFN_02060	MCFN_02055	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AIA29550.1	AIA29551.1	MCFN_02060	MCFN_02065	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.830
AIA29550.1	AIA29552.1	MCFN_02060	MCFN_02070	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.830
AIA29550.1	AIA29553.1	MCFN_02060	MCFN_02075	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
AIA29550.1	AIA29554.1	MCFN_02060	MCFN_02080	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.470
AIA29550.1	rpsR	MCFN_02060	MCFN_02050	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
AIA29550.1	ssb	MCFN_02060	MCFN_02045	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
AIA29551.1	AIA29549.1	MCFN_02065	MCFN_02055	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
AIA29551.1	AIA29550.1	MCFN_02065	MCFN_02060	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
AIA29551.1	AIA29552.1	MCFN_02065	MCFN_02070	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.830
AIA29551.1	AIA29553.1	MCFN_02065	MCFN_02075	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
AIA29551.1	AIA29554.1	MCFN_02065	MCFN_02080	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.470
AIA29551.1	rpsR	MCFN_02065	MCFN_02050	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464