Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpoBDNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (1206 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
rpoA
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
rpsC
30S ribosomal protein S3.
  
 
 0.985
rpsD
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.982
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.982
rpsJ
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.982
rplV
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.981
nusA
Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.981
rplO
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.979
rpsE
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.979
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.