pip protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pip

Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)

Predicted Functional Partners:

aspS

0.786

AIA29563.1

0.505

acpP

0.451

atpD

0.410

nox

0.405

atpG

0.401

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29563.1	aspS	MCFN_02125	MCFN_02135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	aspartyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
AIA29563.1	pip	MCFN_02125	MCFN_02130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
acpP	atpG	MCFN_03175	MCFN_02280	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
acpP	pip	MCFN_03175	MCFN_02130	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
aspS	AIA29563.1	MCFN_02135	MCFN_02125	aspartyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.505
aspS	pip	MCFN_02135	MCFN_02130	aspartyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
atpD	atpG	MCFN_02275	MCFN_02280	F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
atpD	pip	MCFN_02275	MCFN_02130	F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
atpG	acpP	MCFN_02280	MCFN_03175	F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
atpG	atpD	MCFN_02280	MCFN_02275	F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.999
atpG	nox	MCFN_02280	MCFN_00910	F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
atpG	pip	MCFN_02280	MCFN_02130	F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
nox	atpG	MCFN_00910	MCFN_02280	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
nox	pip	MCFN_00910	MCFN_02130	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
pip	AIA29563.1	MCFN_02130	MCFN_02125	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.505
pip	acpP	MCFN_02130	MCFN_03175	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
pip	aspS	MCFN_02130	MCFN_02135	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	aspartyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
pip	atpD	MCFN_02130	MCFN_02275	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.410
pip	atpG	MCFN_02130	MCFN_02280	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
pip	nox	MCFN_02130	MCFN_00910	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405