Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIA29571.1Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)    
Predicted Functional Partners:
ffh
With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.797
AIA29573.1
Integral membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.789
AIA29786.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.667
AIA29237.1
Membrane protein P80; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.630
AIA29570.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.626
AIA29253.1
DnaB-related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.620
AIA29641.1
COF family HAD hydrolase protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
pgiB-1
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
AIA29213.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.560
AIA29762.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.505
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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