ffh protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

ffh

With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)

Predicted Functional Partners:

ftsY

0.999

rplW

0.992

rplD

0.992

rplB

0.991

rplC

0.991

rplM

0.991

rplO

0.990

rplR

0.990

rplX

0.990

rplN

0.990

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ffh	ftsY	MCFN_02170	MCFN_02985	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ffh	rplB	MCFN_02170	MCFN_02405	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.991
ffh	rplC	MCFN_02170	MCFN_02420	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
ffh	rplD	MCFN_02170	MCFN_02415	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ffh	rplM	MCFN_02170	MCFN_02890	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
ffh	rplN	MCFN_02170	MCFN_02370	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ffh	rplO	MCFN_02170	MCFN_02330	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ffh	rplR	MCFN_02170	MCFN_02340	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ffh	rplW	MCFN_02170	MCFN_02410	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ffh	rplX	MCFN_02170	MCFN_02365	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ftsY	ffh	MCFN_02985	MCFN_02170	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	With 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ftsY	rplB	MCFN_02985	MCFN_02405	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.977
ftsY	rplC	MCFN_02985	MCFN_02420	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ftsY	rplD	MCFN_02985	MCFN_02415	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
ftsY	rplM	MCFN_02985	MCFN_02890	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
ftsY	rplN	MCFN_02985	MCFN_02370	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
ftsY	rplO	MCFN_02985	MCFN_02330	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
ftsY	rplR	MCFN_02985	MCFN_02340	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ftsY	rplW	MCFN_02985	MCFN_02410	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
ftsY	rplX	MCFN_02985	MCFN_02365	Cell division protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968

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