AIA29586.1 protein (Mycoplasma californicum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AIA29586.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (92 aa)

Predicted Functional Partners:

AIA29583.1

0.773

AIA29584.1

0.773

AIA29585.1

0.773

AIA29587.1

0.741

AIA29582.1

0.509

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29582.1	AIA29583.1	MCFN_02225	MCFN_02230	Nuclease lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
AIA29582.1	AIA29584.1	MCFN_02225	MCFN_02235	Nuclease lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
AIA29582.1	AIA29585.1	MCFN_02225	MCFN_02240	Nuclease lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
AIA29582.1	AIA29586.1	MCFN_02225	MCFN_02245	Nuclease lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.509
AIA29582.1	AIA29587.1	MCFN_02225	MCFN_02250	Nuclease lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.501
AIA29583.1	AIA29582.1	MCFN_02230	MCFN_02225	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nuclease lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.614
AIA29583.1	AIA29584.1	MCFN_02230	MCFN_02235	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIA29583.1	AIA29585.1	MCFN_02230	MCFN_02240	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AIA29583.1	AIA29586.1	MCFN_02230	MCFN_02245	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AIA29583.1	AIA29587.1	MCFN_02230	MCFN_02250	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.742
AIA29584.1	AIA29582.1	MCFN_02235	MCFN_02225	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nuclease lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.614
AIA29584.1	AIA29583.1	MCFN_02235	MCFN_02230	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIA29584.1	AIA29585.1	MCFN_02235	MCFN_02240	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIA29584.1	AIA29586.1	MCFN_02235	MCFN_02245	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AIA29584.1	AIA29587.1	MCFN_02235	MCFN_02250	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.742
AIA29585.1	AIA29582.1	MCFN_02240	MCFN_02225	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nuclease lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.614
AIA29585.1	AIA29583.1	MCFN_02240	MCFN_02230	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AIA29585.1	AIA29584.1	MCFN_02240	MCFN_02235	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AIA29585.1	AIA29586.1	MCFN_02240	MCFN_02245	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AIA29585.1	AIA29587.1	MCFN_02240	MCFN_02250	ABC transporter permease protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.742