rplV protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

rplV

50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)

Predicted Functional Partners:

rplR

0.999

rplF

0.999

rplE

0.999

rplX

0.999

rpmC

0.999

rplC

0.999

rplO

0.998

rplN

0.998

rplP

0.998

rpsC

0.998

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplC	rplE	MCFN_02420	MCFN_02360	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplC	rplF	MCFN_02420	MCFN_02345	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplC	rplN	MCFN_02420	MCFN_02370	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplC	rplO	MCFN_02420	MCFN_02330	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplC	rplP	MCFN_02420	MCFN_02385	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplC	rplR	MCFN_02420	MCFN_02340	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplC	rplV	MCFN_02420	MCFN_02395	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplC	rplX	MCFN_02420	MCFN_02365	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
rplC	rpmC	MCFN_02420	MCFN_02380	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L29; One of the stabilizing components for the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
rplC	rpsC	MCFN_02420	MCFN_02390	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3.	0.997
rplE	rplC	MCFN_02360	MCFN_02420	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplE	rplF	MCFN_02360	MCFN_02345	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplE	rplN	MCFN_02360	MCFN_02370	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplE	rplO	MCFN_02360	MCFN_02330	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplE	rplP	MCFN_02360	MCFN_02385	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplE	rplR	MCFN_02360	MCFN_02340	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplE	rplV	MCFN_02360	MCFN_02395	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplE	rplX	MCFN_02360	MCFN_02365	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplE	rpmC	MCFN_02360	MCFN_02380	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L29; One of the stabilizing components for the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplE	rpsC	MCFN_02360	MCFN_02390	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3.	0.998