Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rplD50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)    
Predicted Functional Partners:
rpsC
30S ribosomal protein S3.
 
 0.999
rplC
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
rpsJ
30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
rpsE
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
rplR
50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
rpsH
30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 0.998
rplX
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
rpsQ
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
rpmC
50S ribosomal protein L29; One of the stabilizing components for the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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