STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
deoAPyrimidine-nucleoside phosphorylase; Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (432 aa)    
Predicted Functional Partners:
deoD
Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.991
deoC
Deoxyribose-phosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.965
upp
Uracil phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.951
cdd
Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.951
deoB
Phosphopentomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.909
era
GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.539
obgE
GTP-binding protein Obg/CgtA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.473
AIA29646.1
TatD family nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
ksgA
16S ribosomal RNA methyltransferase (KsgA/Dim1 family); Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
trmE
tRNA modification GTPase TrmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.400
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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