Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIA29652.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)    
Predicted Functional Partners:
AIA29303.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.687
AIA29772.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.674
recO
DNA recombination protein RecO; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.611
AIA29759.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.522
AIA29651.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.488
lspA
Lipoprotein signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.438
truB
tRNA pseudouridine synthase B.
 
 
   0.435
AIA29384.1
Putative choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.418
dnaJ
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.413
AIA29758.1
Major facilitator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.401
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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