Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
AIA29656.1DHH family phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
AIA29655.1
DHH family phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.982
deoB
Phosphopentomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
msrAB
Peptide methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.513
recO
DNA recombination protein RecO; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
rbfA
Ribosome-binding factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.433
plsX
Phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.407
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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