hpt protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hpt

Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)

Predicted Functional Partners:

apt

0.959

gmk

0.944

adk

0.936

tilS

0.936

deoD

0.918

ftsH

0.780

dgk-1

0.764

dgk-2

0.696

greA

0.681

AIA29677.1

0.609

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29677.1	dgk-1	MCFN_02795	MCFN_02780	Putative Holliday junction resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AIA29677.1	dgk-2	MCFN_02795	MCFN_02775	Putative Holliday junction resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
AIA29677.1	greA	MCFN_02795	MCFN_02785	Putative Holliday junction resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription elongation factor GreA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
AIA29677.1	hpt	MCFN_02795	MCFN_02770	Putative Holliday junction resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
adk	apt	MCFN_01455	MCFN_03315	Adenylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
adk	gmk	MCFN_01455	MCFN_00930	Adenylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Guanylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
adk	hpt	MCFN_01455	MCFN_02770	Adenylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
apt	adk	MCFN_03315	MCFN_01455	Adenine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
apt	deoD	MCFN_03315	MCFN_02590	Adenine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
apt	gmk	MCFN_03315	MCFN_00930	Adenine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Guanylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
apt	hpt	MCFN_03315	MCFN_02770	Adenine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
deoD	apt	MCFN_02590	MCFN_03315	Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
deoD	dgk-1	MCFN_02590	MCFN_02780	Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
deoD	dgk-2	MCFN_02590	MCFN_02775	Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
deoD	hpt	MCFN_02590	MCFN_02770	Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
dgk-1	AIA29677.1	MCFN_02780	MCFN_02795	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putative Holliday junction resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
dgk-1	deoD	MCFN_02780	MCFN_02590	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
dgk-1	dgk-2	MCFN_02780	MCFN_02775	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
dgk-1	gmk	MCFN_02780	MCFN_00930	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Guanylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
dgk-1	greA	MCFN_02780	MCFN_02785	Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription elongation factor GreA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728