Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dgk-2Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.875
dgk-1
Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.841
AIA29786.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.715
AIA29332.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.712
hpt
Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.693
greA
Transcription elongation factor GreA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.661
AIA29356.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.646
AIA29539.1
Putative metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.562
pepA-1
Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.561
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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