STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgk-1Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
acpP
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.985
dgk-2
Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.984
gmk
Guanylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.949
deoD
Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.909
hpt
Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.764
greA
Transcription elongation factor GreA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.728
alaS
alanyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.635
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.628
AIA29677.1
Putative Holliday junction resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.619
pepA-1
Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.612
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.