Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIA29677.1Putative Holliday junction resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.899
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.832
AIA29676.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.821
greA
Transcription elongation factor GreA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.701
efp
Elongation factor P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.658
dgk-1
Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
AIA29680.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.596
hpt
Hypoxanthine phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.587
dgk-2
Deoxyguanosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
plsY
Glycerol-3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.425
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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