STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pncBNicotinate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)    
Predicted Functional Partners:
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.960
deoD
Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.916
plsY
Glycerol-3-phosphate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.818
AIA29684.1
LemA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
efp
Elongation factor P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.500
greA
Transcription elongation factor GreA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.479
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.472
nadE
NH(3)-dependent NAD(+) synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.465
AIA29380.1
SIR2 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.447
AIA29680.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.447
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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