Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
licACholine/ethanolamine kinase family protein LicA; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)    
Predicted Functional Partners:
AIA29568.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.766
AIA29495.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
chrA-2
Chromate ion transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
AIA29758.1
Major facilitator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.615
potD
Spermidine/putrescine ABC transporter substrate-binding lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.593
AIA29242.1
In some Mycoplasma, this protein is fused to aspartyl/glutamyl-tRNA amidotransferase subunit C domain; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
lepA
GTP-binding protein LepA; Back-translocating Elongation Factor EF4; binds to the ribosome on the universally-conserved alpha-sarcin loop; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
lspA
Lipoprotein signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.546
recO
DNA recombination protein RecO; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.540
AIA29356.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.529
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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