Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIA29691.1Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.874
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.843
dinB
DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.821
nifU
NifU family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.821
nifS
Aminotransferase class V; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.821
rplM
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.660
engA
GTP-binding protein EngA (Der); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.527
scpB
Segregation and condensation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.475
rpsI
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.
       0.448
rplD
50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.408
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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