dinB protein (Mycoplasma californicum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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co-expression

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[Homology]

Score

dinB

DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)

Predicted Functional Partners:

dnaN

0.963

AIA29293.1

0.902

recA

0.883

AIA29775.1

0.877

nadD

0.831

nifS

0.831

AIA29691.1

0.821

nifU

0.821

potA

0.669

topA

0.659

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29293.1	dinB	MCFN_00640	MCFN_02875	Lipoprotein nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AIA29293.1	potA	MCFN_00640	MCFN_00610	Lipoprotein nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AIA29293.1	recA	MCFN_00640	MCFN_02465	Lipoprotein nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AIA29691.1	dinB	MCFN_02865	MCFN_02875	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AIA29691.1	nadD	MCFN_02865	MCFN_02870	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
AIA29691.1	nifS	MCFN_02865	MCFN_02885	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase class V; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AIA29691.1	nifU	MCFN_02865	MCFN_02880	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NifU family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
AIA29775.1	dinB	MCFN_03340	MCFN_02875	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AIA29775.1	dnaN	MCFN_03340	MCFN_00010	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AIA29775.1	potA	MCFN_03340	MCFN_00610	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AIA29775.1	recA	MCFN_03340	MCFN_02465	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AIA29775.1	topA	MCFN_03340	MCFN_02030	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
dinB	AIA29293.1	MCFN_02875	MCFN_00640	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipoprotein nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
dinB	AIA29691.1	MCFN_02875	MCFN_02865	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
dinB	AIA29775.1	MCFN_02875	MCFN_03340	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
dinB	dnaN	MCFN_02875	MCFN_00010	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
dinB	nadD	MCFN_02875	MCFN_02870	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide to nicotinic acid adenine dinucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
dinB	nifS	MCFN_02875	MCFN_02885	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase class V; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
dinB	nifU	MCFN_02875	MCFN_02880	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	NifU family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
dinB	potA	MCFN_02875	MCFN_00610	DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669