STRINGSTRING
nifS protein (Mycoplasma californicum) - STRING interaction network
"nifS" - Aminotransferase class V in Mycoplasma californicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifSAminotransferase class V; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)    
Predicted Functional Partners:
nifU
NifU family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (146 aa)
 
 
  0.977
nadD
Probable nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (363 aa)
              0.935
dinB
DNA polymerase IV; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DNA polymerase type-Y family (412 aa)
              0.918
MCFN_02865
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the pseudouridine synthase RsuA family (246 aa)
              0.918
msrAB
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (309 aa)
         
  0.788
nusB
Antitermination protein NusB; Derived by automated computational analysis using gene prediction method- Protein Homology (138 aa)
              0.554
rpsI
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the universal ribosomal protein uS9 family (133 aa)
              0.471
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (144 aa)
              0.471
MCFN_01995
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (762 aa)
   
        0.440
MCFN_01780
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SUA5 family (152 aa)
              0.416
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, Mycoplasma californicum, NCTC 10189, strain ST-6
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