tmk protein (Mycoplasma californicum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

tmk

Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)

Predicted Functional Partners:

rsmI

0.887

dnaX

0.879

dnaH

0.852

AIA29705.1

0.841

recR

0.818

AIA29265.1

0.755

atpE

0.747

atpC

0.746

serS

0.691

AIA29775.1

0.667

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29265.1	dnaX	MCFN_00460	MCFN_02945	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
AIA29265.1	rsmI	MCFN_00460	MCFN_02970	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal RNA small subunit methyltransferase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
AIA29265.1	serS	MCFN_00460	MCFN_00065	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	seryl-tRNA synthetase; Catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AIA29265.1	tmk	MCFN_00460	MCFN_02960	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
AIA29705.1	dnaH	MCFN_02950	MCFN_02965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
AIA29705.1	dnaX	MCFN_02950	MCFN_02945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AIA29705.1	recR	MCFN_02950	MCFN_02955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombination protein RecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AIA29705.1	rsmI	MCFN_02950	MCFN_02970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal RNA small subunit methyltransferase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
AIA29705.1	tmk	MCFN_02950	MCFN_02960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AIA29775.1	dnaH	MCFN_03340	MCFN_02965	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
AIA29775.1	dnaX	MCFN_03340	MCFN_02945	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
AIA29775.1	recR	MCFN_03340	MCFN_02955	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombination protein RecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AIA29775.1	tmk	MCFN_03340	MCFN_02960	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
atpC	atpE	MCFN_02270	MCFN_02300	ATP synthase F1 subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	F0F1 ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
atpC	tmk	MCFN_02270	MCFN_02960	ATP synthase F1 subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
atpE	atpC	MCFN_02300	MCFN_02270	F0F1 ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase F1 subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
atpE	tmk	MCFN_02300	MCFN_02960	F0F1 ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
dnaH	AIA29705.1	MCFN_02965	MCFN_02950	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
dnaH	AIA29775.1	MCFN_02965	MCFN_03340	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
dnaH	dnaX	MCFN_02965	MCFN_02945	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979