AIA29710.1 protein (Mycoplasma californicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AIA29710.1

Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)

Predicted Functional Partners:

AIA29364.1

0.944

recR

0.570

AIA29705.1

0.555

tmk

0.544

dnaH

0.544

rsmI

0.544

dnaX

0.503

topA

0.409

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29364.1	AIA29710.1	MCFN_01035	MCFN_02975	Metallo-beta-lactamase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AIA29364.1	topA	MCFN_01035	MCFN_02030	Metallo-beta-lactamase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
AIA29705.1	AIA29710.1	MCFN_02950	MCFN_02975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AIA29705.1	dnaH	MCFN_02950	MCFN_02965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
AIA29705.1	dnaX	MCFN_02950	MCFN_02945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AIA29705.1	recR	MCFN_02950	MCFN_02955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombination protein RecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AIA29705.1	rsmI	MCFN_02950	MCFN_02970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal RNA small subunit methyltransferase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
AIA29705.1	tmk	MCFN_02950	MCFN_02960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AIA29710.1	AIA29364.1	MCFN_02975	MCFN_01035	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metallo-beta-lactamase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AIA29710.1	AIA29705.1	MCFN_02975	MCFN_02950	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AIA29710.1	dnaH	MCFN_02975	MCFN_02965	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AIA29710.1	dnaX	MCFN_02975	MCFN_02945	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AIA29710.1	recR	MCFN_02975	MCFN_02955	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombination protein RecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AIA29710.1	rsmI	MCFN_02975	MCFN_02970	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal RNA small subunit methyltransferase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AIA29710.1	tmk	MCFN_02975	MCFN_02960	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thymidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AIA29710.1	topA	MCFN_02975	MCFN_02030	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
dnaH	AIA29705.1	MCFN_02965	MCFN_02950	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.862
dnaH	AIA29710.1	MCFN_02965	MCFN_02975	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
dnaH	dnaX	MCFN_02965	MCFN_02945	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunits gamma and tau; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
dnaH	recR	MCFN_02965	MCFN_02955	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombination protein RecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877