era protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

era

GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)

Predicted Functional Partners:

AIA29724.1

0.990

rpsP

0.981

rpsF

0.981

rpsG

0.978

ksgA

0.967

rpsI

0.965

cdd

0.941

rpsJ

0.940

rpsO

0.934

rpsE

0.929

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIA29724.1	cdd	MCFN_03045	MCFN_03040	Putative rRNA maturation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
AIA29724.1	era	MCFN_03045	MCFN_03035	Putative rRNA maturation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
cdd	AIA29724.1	MCFN_03040	MCFN_03045	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putative rRNA maturation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
cdd	era	MCFN_03040	MCFN_03035	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
era	AIA29724.1	MCFN_03035	MCFN_03045	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putative rRNA maturation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
era	cdd	MCFN_03035	MCFN_03040	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
era	ksgA	MCFN_03035	MCFN_02620	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	16S ribosomal RNA methyltransferase (KsgA/Dim1 family); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
era	rpsE	MCFN_03035	MCFN_02335	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
era	rpsF	MCFN_03035	MCFN_02040	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S6.	0.981
era	rpsG	MCFN_03035	MCFN_00495	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.978
era	rpsI	MCFN_03035	MCFN_02895	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.965
era	rpsJ	MCFN_03035	MCFN_02425	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
era	rpsO	MCFN_03035	MCFN_01345	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
era	rpsP	MCFN_03035	MCFN_00265	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
ksgA	era	MCFN_02620	MCFN_03035	16S ribosomal RNA methyltransferase (KsgA/Dim1 family); Derived by automated computational analysis using gene prediction method: Protein Homology.	GTP-binding protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
ksgA	rpsE	MCFN_02620	MCFN_02335	16S ribosomal RNA methyltransferase (KsgA/Dim1 family); Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ksgA	rpsF	MCFN_02620	MCFN_02040	16S ribosomal RNA methyltransferase (KsgA/Dim1 family); Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S6.	0.968
ksgA	rpsG	MCFN_02620	MCFN_00495	16S ribosomal RNA methyltransferase (KsgA/Dim1 family); Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.990
ksgA	rpsI	MCFN_02620	MCFN_02895	16S ribosomal RNA methyltransferase (KsgA/Dim1 family); Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.970
ksgA	rpsJ	MCFN_02620	MCFN_02425	16S ribosomal RNA methyltransferase (KsgA/Dim1 family); Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S10; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985