Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
prmCProtein-(Glutamine-N5) methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)    
Predicted Functional Partners:
prfA
Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
acpP
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.798
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
    0.526
rplA
50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.525
atpE
F0F1 ATP synthase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.524
atpH
ATP synthase F1 subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.506
AIA29356.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.473
atpG
F0F1 ATP synthase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.473
atpA-2
ATP F0F1 synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.472
atpA
F0F1 ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.472
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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