STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluDRibosomal large subunit pseudouridine synthase D; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)    
Predicted Functional Partners:
AIA29754.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.781
rplQ
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.777
rplU
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.766
rplO
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.763
rplM
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.756
rplC
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.755
rplN
50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.750
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.747
rplX
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.745
trmE
tRNA modification GTPase TrmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.647
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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