Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIA29759.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (972 aa)    
Predicted Functional Partners:
AIA29519.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.831
AIA29254.1
dephospho-CoA kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.739
AIA29521.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.680
AIA29253.1
DnaB-related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
AIA29758.1
Major facilitator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.630
AIA29282.1
COF family HAD hydrolase.
 
    0.572
AIA29568.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.571
fmt
methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.569
rpoD
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.555
lspA
Lipoprotein signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.551
Your Current Organism:
Mycoplasma californicum
NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6
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