rpsT protein (Mycoplasma californicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpsT

30S ribosomal protein S20; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)

Predicted Functional Partners:

rpsP

0.999

rpsO

0.999

rpsI

0.999

rplU

0.998

rpmA

0.998

rpmB

0.998

rpmF

0.998

rpsD

0.998

rpmE

0.998

rpsB

0.998

Your Current Organism:

Mycoplasma californicum

NCBI taxonomy Id: 2113
Other names: ATCC 33461, DSM 21477, M. californicum, NCTC 10189, strain ST-6

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplU	rpmA	MCFN_00835	MCFN_00840	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rplU	rpmB	MCFN_00835	MCFN_01020	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplU	rpmE	MCFN_00835	MCFN_01285	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplU	rpmF	MCFN_00835	MCFN_01220	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplU	rpsB	MCFN_00835	MCFN_01550	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplU	rpsD	MCFN_00835	MCFN_01280	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplU	rpsI	MCFN_00835	MCFN_02895	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.998
rplU	rpsO	MCFN_00835	MCFN_01345	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplU	rpsP	MCFN_00835	MCFN_00265	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rplU	rpsT	MCFN_00835	MCFN_03290	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S20; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpmA	rplU	MCFN_00840	MCFN_00835	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rpmA	rpmB	MCFN_00840	MCFN_01020	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpmA	rpmE	MCFN_00840	MCFN_01285	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpmA	rpmF	MCFN_00840	MCFN_01220	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpmA	rpsB	MCFN_00840	MCFN_01550	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpmA	rpsD	MCFN_00840	MCFN_01280	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpmA	rpsI	MCFN_00840	MCFN_02895	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.	0.998
rpmA	rpsO	MCFN_00840	MCFN_01345	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpmA	rpsP	MCFN_00840	MCFN_00265	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
rpmA	rpsT	MCFN_00840	MCFN_03290	50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S20; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998